3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00736

Details:

PFam ID : PF00736

PFam Domain Description : EF-1 guanine nucleotide exchange domain

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 299

Average sequence length: 86.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00736	B6AJT0_CRYMR_140_251	69.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00736	B9ENI3_SALSA_6_51	100

Sequence based PCA Plot of the family - PF00736 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay