3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00733

Details:

PFam ID : PF00733

PFam Domain Description : Asparagine synthase

Number of Sequence in 50% Dataset : 732

Number of Sequence in Full Dataset : 2339

Average sequence length: 239.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00733	E3CQH3_STRVE_1_150	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00733	Q83S76_SHIFL_211_255	100

Sequence based PCA Plot of the family - PF00733 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=12 Length=8
Motif3 Start=58 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay