3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00732

Details:

PFam ID : PF00732

PFam Domain Description : GMC oxidoreductase

Number of Sequence in 50% Dataset : 575

Number of Sequence in Full Dataset : 3430

Average sequence length: 257.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00732	B0CBH5_ACAM1_13_285	86.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00732	P2OX_EMENI_206_334	100

Sequence based PCA Plot of the family - PF00732 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=71 Length=8
Motif2 Start=84 Length=8
Motif3 Start=46 Length=11
Motif4 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay