3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00731

Details:

PFam ID : PF00731

PFam Domain Description : AIR carboxylase

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 1498

Average sequence length: 145.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00731	D7TXE0_VITVI_69_176	47.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00731	D7BNM1_ARCHD_2_87	99.9

Sequence based PCA Plot of the family - PF00731 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=41 Length=17
Motif3 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay