3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00730

Details:

PFam ID : PF00730

PFam Domain Description : HhH-GPD superfamily base excision DNA repair protein

Number of Sequence in 50% Dataset : 297

Number of Sequence in Full Dataset : 4212

Average sequence length: 140.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00730	B9PT42_TOXGO_559_808	86.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00730	D7FJW7_ECTSI_111_293	99.3

Sequence based PCA Plot of the family - PF00730 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=21 Length=8
Motif3 Start=86 Length=8
Motif4 Start=112 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay