3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00729

Details:

PFam ID : PF00729

PFam Domain Description : Viral coat protein (S domain)

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 117

Average sequence length: 191.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00729	B5WYM8_9VIRU_12_250	69.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00729	Q2Q468_9TOMB_44_246	100

Sequence based PCA Plot of the family - PF00729 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=189 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay