3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00728

Details:

PFam ID : PF00728

PFam Domain Description : Glycosyl hydrolase family 20, catalytic domain

Number of Sequence in 50% Dataset : 301

Number of Sequence in Full Dataset : 1345

Average sequence length: 313.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00728	A9TBY7_PHYPA_112_262	97.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00728	D0I1G7_VIBCH_402_575	100

Sequence based PCA Plot of the family - PF00728 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=191 Length=8
Motif2 Start=421 Length=8
Motif3 Start=1 Length=14
Motif4 Start=30 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay