3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00727

Details:

PFam ID : PF00727

PFam Domain Description : Interleukin 4

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 43

Average sequence length: 87.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00727	D1YSM1_DANRE_20_123	10

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00727	Q5KT56_MUSMM_25_140	97.6

Sequence based PCA Plot of the family - PF00727 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay