3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00725

Details:

PFam ID : PF00725

PFam Domain Description : 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

Number of Sequence in 50% Dataset : 119

Number of Sequence in Full Dataset : 3003

Average sequence length: 93.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00725	B0Y0K7_ASPFC_192_236	61.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00725	E1QRV0_VULDI_186_295	100

Sequence based PCA Plot of the family - PF00725 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=82 Length=8
Motif3 Start=38 Length=17
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay