3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00724

Details:

PFam ID : PF00724

PFam Domain Description : NADH:flavin oxidoreductase / NADH oxidase family

Number of Sequence in 50% Dataset : 480

Number of Sequence in Full Dataset : 3803

Average sequence length: 307.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00724	B5IP93_9CHRO_1_101	72.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00724	B5IP93_9CHRO_1_101	100

Sequence based PCA Plot of the family - PF00724 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=210 Length=26
Motif2 Start=174 Length=35
Motif3 Start=348 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay