3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00723

Details:

PFam ID : PF00723

PFam Domain Description : Glycosyl hydrolases family 15

Number of Sequence in 50% Dataset : 175

Number of Sequence in Full Dataset : 1040

Average sequence length: 352.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00723	A2F5E6_TRIVA_297_414	97.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00723	Q9LBQ9_ARTGO_309_984	95.3

Sequence based PCA Plot of the family - PF00723 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=457 Length=14
Motif2 Start=400 Length=8
Motif3 Start=22 Length=8
Motif4 Start=141 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay