3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00722

Details:

PFam ID : PF00722

PFam Domain Description : Glycosyl hydrolases family 16

Number of Sequence in 50% Dataset : 416

Number of Sequence in Full Dataset : 2102

Average sequence length: 177.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00722	F2AUE9_RHOBA_183_339	93.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00722	C7PDH4_CHIPD_659_739	98.1

Sequence based PCA Plot of the family - PF00722 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=48 Length=11
Motif2 Start=210 Length=8
Motif3 Start=232 Length=8
Motif4 Start=163 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay