3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00721

Details:

PFam ID : PF00721

PFam Domain Description : Virus coat protein (TMV like)

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 86

Average sequence length: 141

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00721	Q68VH2_9POTY_233_363	70.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00721	Q9YXD2_9POTY_261_394	98.8

Sequence based PCA Plot of the family - PF00721 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay