3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00719

Details:

PFam ID : PF00719

PFam Domain Description : Inorganic pyrophosphatase

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 961

Average sequence length: 154.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00719	E8UB28_DEIML_19_101	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00719	D2W0N2_NAEGR_56_256	100

Sequence based PCA Plot of the family - PF00719 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=45 Length=8
Motif2 Start=82 Length=8
Motif3 Start=1 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay