3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00716

Details:

PFam ID : PF00716

PFam Domain Description : Assemblin (Peptidase family S21)

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 57

Average sequence length: 287.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00716	O12271_HHV1_37_247	80.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00716	PPR_PSHV1_28_408	96.4

Sequence based PCA Plot of the family - PF00716 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay