3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00714

Details:

PFam ID : PF00714

PFam Domain Description : Interferon gamma

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 44

Average sequence length: 121

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00714	HIR18_HIRMA_1_60	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00714	F1D7Y1_LABRO_20_167	100

Sequence based PCA Plot of the family - PF00714 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay