3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00712

Details:

PFam ID : PF00712

PFam Domain Description : DNA polymerase III beta subunit, N-terminal domain

Number of Sequence in 50% Dataset : 240

Number of Sequence in Full Dataset : 1141

Average sequence length: 119.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00712	D8FXF8_9CYAN_64_205	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00712	D8FXF8_9CYAN_64_205	100

Sequence based PCA Plot of the family - PF00712 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=78 Length=8
Motif2 Start=28 Length=8
Motif3 Start=1 Length=8
Motif4 Start=132 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay