3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00710

Details:

PFam ID : PF00710

PFam Domain Description : Asparaginase

Number of Sequence in 50% Dataset : 204

Number of Sequence in Full Dataset : 1259

Average sequence length: 298.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00710	D6WPV5_TRICA_6_88	84.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00710	B9Z8W1_9NEIS_2_379	100

Sequence based PCA Plot of the family - PF00710 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=8
Motif2 Start=31 Length=8
Motif3 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay