3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00709

Details:

PFam ID : PF00709

PFam Domain Description : Adenylosuccinate synthetase

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 1340

Average sequence length: 366.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00709	B2KEG3_ELUMP_2_147	56.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00709	Q6R6A8_9CAUD_133_328	100

Sequence based PCA Plot of the family - PF00709 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=8 Length=17
Motif2 Start=52 Length=8
Motif3 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay