3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00708

Details:

PFam ID : PF00708

PFam Domain Description : Acylphosphatase

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 1576

Average sequence length: 89.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00708	E2BXV8_9HYME_7_67	73.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00708	A2BMU2_HYPBU_1_53	100

Sequence based PCA Plot of the family - PF00708 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=41 Length=8
Motif2 Start=32 Length=8
Motif3 Start=14 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay