3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00707

Details:

PFam ID : PF00707

PFam Domain Description : Translation initiation factor IF-3, C-terminal domain

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 944

Average sequence length: 87.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00707	Q4X4U9_PLACH_72_117	50.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00707	Q0F8J0_9RHOB_1_52	100

Sequence based PCA Plot of the family - PF00707 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=73 Length=8
Motif2 Start=28 Length=18
Motif3 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay