3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00704

Details:

PFam ID : PF00704

PFam Domain Description : Glycosyl hydrolases family 18

Number of Sequence in 50% Dataset : 881

Number of Sequence in Full Dataset : 3901

Average sequence length: 263.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00704	A2QWN8_ASPNC_60_279	88.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00704	E2M3F1_MONPE_2_114	99.4

Sequence based PCA Plot of the family - PF00704 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=37 Length=8
Motif3 Start=4 Length=8
Motif4 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay