3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00703

Details:

PFam ID : PF00703

PFam Domain Description : Glycosyl hydrolases family 2

Number of Sequence in 50% Dataset : 1224

Number of Sequence in Full Dataset : 2318

Average sequence length: 106.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00703	C4Q4Q9_SCHMA_241_345	99.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00703	D5UV41_TSUPD_253_310	100

Sequence based PCA Plot of the family - PF00703 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=20
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay