3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00702

Details:

PFam ID : PF00702

PFam Domain Description : haloacid dehalogenase-like hydrolase

Number of Sequence in 50% Dataset : 1411

Number of Sequence in Full Dataset : 9709

Average sequence length: 257.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00702	O30046_ARCFU_6_65	92.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00702	P74722_SYNY3_31_215	99.8

Sequence based PCA Plot of the family - PF00702 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=15 Length=8
Motif3 Start=204 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay