3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00701

Details:

PFam ID : PF00701

PFam Domain Description : Dihydrodipicolinate synthetase family

Number of Sequence in 50% Dataset : 472

Number of Sequence in Full Dataset : 3182

Average sequence length: 280.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00701	A9V4P2_MONBE_829_973	85.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00701	E6RAU4_CRYGW_16_336	100

Sequence based PCA Plot of the family - PF00701 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=21
Motif2 Start=34 Length=8
Motif3 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay