3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00699

Details:

PFam ID : PF00699

PFam Domain Description : Urease beta subunit

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 514

Average sequence length: 98.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00699	E3K960_PUCGT_484_757	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00699	B3TA99_9ARCH_2_64	99.2

Sequence based PCA Plot of the family - PF00699 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=1 Length=8
Motif4 Start=50 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay