3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00696

Details:

PFam ID : PF00696

PFam Domain Description : Amino acid kinase family

Number of Sequence in 50% Dataset : 451

Number of Sequence in Full Dataset : 6219

Average sequence length: 237.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00696	F0B7F7_NEIME_2_100	73.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00696	C9QJ01_VIBOR_3_153	99.6

Sequence based PCA Plot of the family - PF00696 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=3 Length=14
Motif3 Start=133 Length=17
Motif4 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay