3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00694

Details:

PFam ID : PF00694

PFam Domain Description : Aconitase C-terminal domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 2319

Average sequence length: 113.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00694	D9PKP6_9ZZZZ_1_47	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00694	D4KG71_9FIRM_1_34	99.0

Sequence based PCA Plot of the family - PF00694 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=20
Motif2 Start=39 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay