3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00691

Details:

PFam ID : PF00691

PFam Domain Description : OmpA family

Number of Sequence in 50% Dataset : 886

Number of Sequence in Full Dataset : 5593

Average sequence length: 97.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00691	F2GY87_BRUME_1_69	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00691	F0GFK5_9BURK_1_46	99.9

Sequence based PCA Plot of the family - PF00691 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=37 Length=8
Motif3 Start=77 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay