3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00690

Details:

PFam ID : PF00690

PFam Domain Description : Cation transporter/ATPase, N-terminus

Number of Sequence in 50% Dataset : 237

Number of Sequence in Full Dataset : 3154

Average sequence length: 65.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00690	E1Z9M4_9CHLO_1_41	91.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00690	E9FAK4_METAR_138_223	100

Sequence based PCA Plot of the family - PF00690 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=48 Length=8
Motif2 Start=33 Length=8
Motif3 Start=1 Length=8
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay