3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00689

Details:

PFam ID : PF00689

PFam Domain Description : Cation transporting ATPase, C-terminus

Number of Sequence in 50% Dataset : 375

Number of Sequence in Full Dataset : 2728

Average sequence length: 179.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00689	A6RAV1_AJECN_831_877	79.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00689	D2W2A3_NAEGR_672_812	99.7

Sequence based PCA Plot of the family - PF00689 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=20 Length=27
Motif2 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay