3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00688

Details:

PFam ID : PF00688

PFam Domain Description : TGF-beta propeptide

Number of Sequence in 50% Dataset : 302

Number of Sequence in Full Dataset : 805

Average sequence length: 187.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00688	B3N1X2_DROAN_50_124	90.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00688	D2DEC8_TRISP_45_218	98.8

Sequence based PCA Plot of the family - PF00688 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=89 Length=8
Motif3 Start=40 Length=8
Motif4 Start=137 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay