3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00684

Details:

PFam ID : PF00684

PFam Domain Description : DnaJ central domain

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 1737

Average sequence length: 63.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00684	B7G4P7_PHATC_140_192	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00684	C5DN27_LACTC_130_211	100

Sequence based PCA Plot of the family - PF00684 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay