3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00683

Details:

PFam ID : PF00683

PFam Domain Description : TB domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 242

Average sequence length: 42.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00683	C3YQ58_BRAFL_510_558	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00683	C4PX42_SCHMA_160_196	99.1

Sequence based PCA Plot of the family - PF00683 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=29 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay