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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00682
Details:

PFam ID : PF00682

PFam Domain Description : HMGL-like

Number of Sequence in 50% Dataset : 207

Number of Sequence in Full Dataset : 3767

Average sequence length: 237.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF00682F0K3S1_CLOAE_114_21775.2
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF00682E5BTS9_9FUSO_17_28999.9
Sequence based PCA Plot of the family - PF00682 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=87 Length=8
Motif2 Start=126 Length=8
Motif3 Start=27 Length=8
Motif4 Start=1 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay