3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00682 Details: PFam ID : PF00682 PFam Domain Description : HMGL-like Number of Sequence in 50% Dataset : 207 Number of Sequence in Full Dataset : 3767 Average sequence length: 237.4 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF00682F0K3S1_CLOAE_114_21775.2 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF00682E5BTS9_9FUSO_17_28999.9 Sequence based PCA Plot of the family - PF00682 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=87 Length=8Motif2 Start=126 Length=8Motif3 Start=27 Length=8Motif4 Start=1 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF00682
PFam Domain Description : HMGL-like
Number of Sequence in 50% Dataset : 207
Number of Sequence in Full Dataset : 3767
Average sequence length: 237.4
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER