3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00679

Details:

PFam ID : PF00679

PFam Domain Description : Elongation factor G C-terminus

Number of Sequence in 50% Dataset : 115

Number of Sequence in Full Dataset : 3965

Average sequence length: 87.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00679	D2V030_NAEGR_608_683	81.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00679	C5DG88_LACTC_669_794	100

Sequence based PCA Plot of the family - PF00679 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=4 Length=20
Motif3 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay