3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00677

Details:

PFam ID : PF00677

PFam Domain Description : Lumazine binding domain

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 2438

Average sequence length: 84.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00677	D3V3J2_XENBS_2_66	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00677	A8PSK4_MALGO_122_241	100

Sequence based PCA Plot of the family - PF00677 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=94 Length=8
Motif2 Start=112 Length=8
Motif3 Start=47 Length=17
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay