3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00676

Details:

PFam ID : PF00676

PFam Domain Description : Dehydrogenase E1 component

Number of Sequence in 50% Dataset : 149

Number of Sequence in Full Dataset : 2477

Average sequence length: 296.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00676	C0ACV3_9BACT_1_115	70.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00676	B7G118_PHATC_391_623	100

Sequence based PCA Plot of the family - PF00676 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=52 Length=8
Motif2 Start=23 Length=11
Motif3 Start=36 Length=8
Motif4 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay