3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00674

Details:

PFam ID : PF00674

PFam Domain Description : DUP family

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 120

Average sequence length: 99.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00674	C5DCY0_LACTC_57_163	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00674	C5DDD0_LACTC_60_171	99.1

Sequence based PCA Plot of the family - PF00674 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=41 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay