3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00672

Details:

PFam ID : PF00672

PFam Domain Description : HAMP domain

Number of Sequence in 50% Dataset : 5449

Number of Sequence in Full Dataset : 19068

Average sequence length: 70.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00672	D5MGJ3_9BACT_13_57	93.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00672	B4VSU0_9CYAN_1_38	99.4

Sequence based PCA Plot of the family - PF00672 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=62 Length=11
Motif2 Start=34 Length=8
Motif3 Start=51 Length=8
Motif4 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay