3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00669

Details:

PFam ID : PF00669

PFam Domain Description : Flavin reductase like domain

Number of Sequence in 50% Dataset : 344

Number of Sequence in Full Dataset : 1952

Average sequence length: 134.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00669	Q04UW5_LEPBJ_28_117	70.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00669	Q04UW5_LEPBJ_28_117	99.8

Sequence based PCA Plot of the family - PF00669 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=1 Length=8
Motif3 Start=13 Length=8
Motif4 Start=79 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay