3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00667

Details:

PFam ID : PF00667

PFam Domain Description : FAD binding domain

Number of Sequence in 50% Dataset : 283

Number of Sequence in Full Dataset : 1159

Average sequence length: 192.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00667	A5BYI4_VITVI_26_129	78.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00667	C5L1J0_9ALVE_184_335	100

Sequence based PCA Plot of the family - PF00667 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=44 Length=11
Motif3 Start=1 Length=8
Motif4 Start=96 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay