3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00665

Details:

PFam ID : PF00665

PFam Domain Description : Integrase core domain

Number of Sequence in 50% Dataset : 838

Number of Sequence in Full Dataset : 8175

Average sequence length: 111.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00665	C5LXG0_9ALVE_1_51	87.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00665	A7SS32_NEMVE_220_300	99.2

Sequence based PCA Plot of the family - PF00665 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=115 Length=8
Motif2 Start=43 Length=8
Motif3 Start=3 Length=8
Motif4 Start=142 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay