3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00664

Details:

PFam ID : PF00664

PFam Domain Description : ABC transporter transmembrane region

Number of Sequence in 50% Dataset : 4297

Number of Sequence in Full Dataset : 17184

Average sequence length: 264.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00664	D0N5H1_PHYIT_6_187	91.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00664	D4LMH7_9FIRM_17_203	99.9

Sequence based PCA Plot of the family - PF00664 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=164 Length=8
Motif2 Start=1 Length=8
Motif3 Start=151 Length=8
Motif4 Start=87 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay