3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00662

Details:

PFam ID : PF00662

PFam Domain Description : NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 3017

Average sequence length: 60.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00662	Q34177_CEPNE_34_108	97.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00662	Q34177_CEPNE_34_108	99.9

Sequence based PCA Plot of the family - PF00662 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=44 Length=8
Motif3 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay