3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00661

Details:

PFam ID : PF00661

PFam Domain Description : Viral matrix protein

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 61

Average sequence length: 270.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00661	Q91KQ0_9PARA_1_84	79.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00661	C3TWP8_9PARA_4_358	100

Sequence based PCA Plot of the family - PF00661 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=113 Length=8
Motif2 Start=272 Length=8
Motif3 Start=54 Length=8
Motif4 Start=237 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay