3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00657

Details:

PFam ID : PF00657

PFam Domain Description : GDSL-like Lipase/Acylhydrolase

Number of Sequence in 50% Dataset : 604

Number of Sequence in Full Dataset : 2124

Average sequence length: 269.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00657	C1JFI3_9BRAS_3_101	89.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00657	E3WZK1_ANODA_5_192	96.7

Sequence based PCA Plot of the family - PF00657 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=65 Length=8
Motif3 Start=14 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay