3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00656

Details:

PFam ID : PF00656

PFam Domain Description : Caspase domain

Number of Sequence in 50% Dataset : 731

Number of Sequence in Full Dataset : 1728

Average sequence length: 230.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00656	E4XD08_OIKDI_5_242	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00656	Q8BQQ5_MOUSE_176_230	98.2

Sequence based PCA Plot of the family - PF00656 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=20
Motif2 Start=67 Length=8
Motif3 Start=104 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay