3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00654

Details:

PFam ID : PF00654

PFam Domain Description : Voltage gated chloride channel

Number of Sequence in 50% Dataset : 462

Number of Sequence in Full Dataset : 2080

Average sequence length: 329.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00654	A9T2K1_PHYPA_100_283	89.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00654	C4AQ86_BURMA_1_76	100

Sequence based PCA Plot of the family - PF00654 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=18
Motif2 Start=91 Length=11
Motif3 Start=61 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay