3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00653

Details:

PFam ID : PF00653

PFam Domain Description : Inhibitor of Apoptosis domain

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 592

Average sequence length: 68.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00653	O09123_MOUSE_1_47	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00653	B0CTP1_LACBS_7_95	100

Sequence based PCA Plot of the family - PF00653 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=11
Motif2 Start=67 Length=11
Motif3 Start=81 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay